FAQ:Delete A QuickBooks Company - Practical QuickBooks.
This is because the Invoice could not be located in QuickBooks. Please ensure that the Invoice does not have any sync conflicts and then try again. The occurs if there is a payment for an invoice, but the invoice isn't in QuickBooks Desktop. There are a few reasons why an invoice has not synced to QuickBooks Desktop: Method Sync Engine isn't.

If that is the case, QuickBooks will allow you to delete the customer entry. To do so, simply highlight the name in your customer list and either right click and choose Delete Customer:Job or click Edit in the menu bar and choose Delete Customer: Job.

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The answer already given, open the invoice, go to the bottom, click on more then choose delete, is correct but more needs to be said. If the invoice was created before the current year and tax returns have already been filed, then you need to know.

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Read How to edit multiple Quickbooks Classes at once in Quickbooks Online How to Edit Quickbooks Online Invoice Number Field Workaround. Click the Sales option from the vertical menu bar on the on the left-hand side on the main dashboard. In the Sales window, click the Invoices option from the top horizontal menu bar. Click on New Invoice.